Satellite evidence of harmful algal blooms and related oceanographic features in the Bohai Sea during autumn 1998

Harmful algal blooms (HABs) are truly global marine phenomena of increasing significance. Some HAB occurrences are different to observe because of their high spatial and temporal variability and their advection, once formed, by surface currents. A serious HAB occurred in the Bohai Sea during autumn 1998, causing the largest fisheries economic loss. The present study analyzes the formation, distribution, and advection of HAB using satellite SeaWiFS ocean color data and other oceanographic data. The results show that the bloom originated in the western coastal waters of the Bohai Sea in early September, and developed southeastward when sea surface temperature (SST) increased to 25-26 °C. The bloom with a high Chl-a concentration (6.5 mg m-3) in center portion covered an area of 60 × 65 km2. At the end of September, the bloom decayed when SST decreased to 22-23 °C. The HAB may have been initiated by a combination of the river discharge nutrients in the west coastal waters and the increase of SST; afterwards it may have been transported eastward by the local circulation that was enhanced by northwesterly winds in late September and early October.

Mapping and characterisation of the inter-reefal benthic assemblages of the Torres Strait

A comprehensive survey of the benthic assemblages of the Torres Strait was conducted in order to provide critical baseline information for regional marine planning, assessing the environmental sustainability of fisheries and understanding the ecosystems of the region. Over 150 sites throughout the region were sampled with a modified prawn trawl, towed underwater video, pipe dredge and epibenthic sled. This manuscript provides a broad overview of the activities undertaken and data collected. Two thousand three hundred and seventy-two different nominal species were sampled by the trawl and sled, only 728 by both gears. The towed video was not able to provide the same level of taxonomic resolution of epibenthic taxa, but was particularly useful in areas where the seabed was too rough to be sampled. Data from the trawl, sled and video were combined to characterise the epibenthic assemblages of the region. Data from the towed video was also used to provide a characterisation of the inter-reefal benthic habitats, which was then analysed in combination with physical covariate data to examine relationships between the two. Levels of mud and gravel in the sediments, trawling effort and seabed current stress were the covariates most significantly correlated with the nature of the seabed habitats.

Physical Oceanographic Influences on Queensland Reef Fish and Scallops : Final Report FRDC 2013/020

The project examined coastal and physical oceanographic influences on the catch rates of coral trout (Plectropomus leopardus) and saucer scallops (Amusium balloti) in Queensland. The research was undertaken to explain variation observed in the catches, and to improve quantitative assessment of the stocks and management advice. 3.1 OBJECTIVES 1. Review recent advances in the study of physical oceanographic influences on fisheries catch data, and describe the major physical oceanographic features that are likely to influence Queensland reef fish and saucer scallops. 2. Collate Queensland’s physical oceanographic data and fisheries (i.e. reef fish and saucer scallops) data. 3. Develop stochastic population models for reef fish and saucer scallops, which can link physical oceanographic features (e.g. sea surface temperature anomalies) to catch rates, biological parameters (e.g. growth, reproduction, natural mortality) and ecological aspects (e.g. spatial distribution).

Variação diária e caracterização morfológica das larvas de peixes do complexo estuarino do Rio Amazonas - PA

A grande importância dos recursos pesqueiros para a Amazônia, aliada à necessidade de ampliar os conhecimentos básicos sobre identificação das larvas de peixes (coletadas em ambiente natural), justifica o desenvolvimento deste trabalho, que tem como objetivo expandir as informações sobre o ictioplâncton, relacionando as com as tendências de variação diária e entre marés, do complexo estuarino do rio Amazonas – PA. As coletas foram realizadas durante o período diurno e noturno, no segundo semestre de 2007, pelo Projeto PIATAM mar II, sob ponto fixo na subárea 1 (estuário do rio Paracauari) e na subárea 2 (baía do Guajará) nas marés de sizígia e quadratura, em arrastos horizontais na sub-superfície da coluna d‟água com rede de plâncton cônico-cilíndrica e malha de 300μm. As amostras foram acondicionadas em recipientes contendo formalina a 4%. Os fatores hidrológicos foram obtidos in situ pelo Grupo de Oceanografia Química do Museu Paraense Emilio Goeldi. As amostras foram triadas e identificadas por meio de características morfológicas, morfométricas e merísticas, baseando-se na técnica de sequência regressiva de desenvolvimento e em bibliografias especializadas. As principais estruturas e características das fases iniciais dos peixes foram descritas e ilustradas, facilitando assim futuros estudos ictioplanctônicos para região. A temperatura superficial da água, potencial hidrogeniônico e oxigênio dissolvido não apresentaram diferenças significativas nas áreas estudadas. Os valores de salinidade não apresentaram diferença significativa entre as estações de coleta e marés, registrando apenas variação horizontal com aumento gradativo em direção à foz com valores máximos (12) e mínimos (0) para as subárea 1 e subárea 2, respectivamente. As maiores densidades de ovos foram registradas na subárea 1, em relação à subárea 2, com as maiores densidades para o período diurno (163,29 ovos/100m³) na subárea 1 e noturno (19,70 ovos/100m³) na subárea 2. As larvas foram distribuídas em 22 taxa representados por 13 famílias e 21 espécies, sendo os taxa dominantes: P. flavipinnis (46,29%), R. amazonica (19,75%), Engraulidae (10,70%), P. squamosissimus (7,55%), A. lineatus (5,19%), O. saurus (3,30%) e Gobiosoma sp. (2,15%), com elevada participação relativa dos Clupeiformes (76,75%). Quanto aos estágios de desenvolvimento, foi observada maior abundância de larvas em pré-flexão nas subáreas 1 e 2, sendo o estágio larval vitelino e pós-flexão os menos representativos. O período noturno apresentou as maiores densidade de larvas e número de taxa, evidenciando uma possível migração nictemeral do ictioplâncton. Apenas M. furnieri apresentou abundância significativamente maior nas amostras diurnas. A grande maioria dos taxa não apresentaram diferenças significativas entre as abundâncias diurnas e noturnas. Logo, a densidade de larvas e o número de taxa diferem entre o período diurno e noturno e entre maré. Portanto, as características morfológicas descritas no presente trabalho permitem uma adequada identificação das larvas, ampliando o conhecimento biológico das espécies estuarinas do litoral paraense, uma vez que as informações sobre larvas de peixes ainda são escassas, fazendo-se necessária uma intensificação nas pesquisas. Além disso, a compreensão da ecologia dos organismos, sobre tudo daqueles que apresentam seu ciclo de vida associado aos estuários, e as variações no transporte das larvas entre os períodos do dia e da noite e entre as marés são questões fundamentais para aprimorar o manejo e a conservação destes recursos renováveis.

Climatic factors associated with phytoplankton community succession during and after the 1977 drought for the San Francisco Bay-Delta Estuary [abstract]

Principal coordinates analysis and multiple regression analysis were used to determine the environmental factors associated with the decline in phytoplankton production during and after the 1977 drought for the San Francisco Bay-Delta Estuary. Physical, chemical and biological data were collected semimonthly or monthly during the spring-summer between 1973 and 1982 from 15 sampling sites located throughout the Bay-Delta. A decline in phytoplankton community diversity and density during the 1977 drought and subsequent years (1978 through 1981) was described using principal coordinates analysis. The best multiple regression which described the changes in phytoplankton community succession contained the variables water temperature, wind velocity and ortho-phosphate concentration. Together these variables accounted for 61 percent of the variation in the phytoplankton community among years described by principal coordinates analysis. An increase in water temperature, wind velocity and ortho-phosphate concentration within the Bay-Delta, beginning in June 1976 and continuing through 1981, was demonstrated using weighted moving averages. From the strong association between phytoplankton community succession and climatic variables it was hypothesized that the decline in phytoplankton production during and after the 1977 drought was associated with climatic changes within the northeast Pacific.

Performance characterisation of a stormwater treatment bioretention basin

Treatment performance of bioretention basins closely depends on hydrologic and hydraulic factors such as rainfall characteristics and inflow and outflow discharges. An in-depth understanding of the influence of these factors on water quality treatment performance can provide important guidance for effective bioretention basin design. In this paper, hydraulic and hydrologic factors impacting pollutant removal by a bioretention basin were assessed under field conditions. Outcomes of the study confirmed that the antecedent dry period plays an important role in influencing treatment performance. A relatively long antecedent dry period reduces nitrite and ammonium concentrations while increasing the nitrate concentration, which confirms that nitrification occurs within the bioretention basin. Additionally, pollutant leaching influences bioretention basin treatment performance, reducing the nutrients removal efficiency, which was lower for high rainfall events. These outcomes will contribute to a greater understanding of the treatment performance of bioretention basins, assisting in the design, operation and maintenance of these systems.

A lesson from cyclone Larry: An untold story of the success of good coastal planning

When tropical cyclone Larry crossed the Queensland coast on 20 March 2006, commercial, recreational and naval vessels in the port of Cairns, 60 km north of the eye of the cyclone and others closer to the eye, were protected from the destructive winds by sheltering in deep mangrove creeks in Trinity Inlet and off other coastal rivers. The Trinity Inlet mangroves are protected under the comprehensive multi-use Trinity Inlet Management Plan, agreed by the local and state government agencies (Cairns City Council, the Cairns Port Authority and the Queensland Government). Using this Australian example and one from the town of Palompon in Leyte province, central Philippines, we show how long-term mangrove habitat protection resulting from well-conceived coastal planning can deliver important economic and infrastructure benefits.

Effects of climate change on reproduction,larval development, and adult health of coral trout (Plectropomus spp.)

Climate change is emerging as the single greatest threat to coral-reef ecosystems.The most immediate impacts will be a loss of diversity and changes to fish community composition and may lead to eventual declines in abundance and productivity of key fisheries species. A key component of this research is to assess effects of projected changes in environmental conditions (temperature and ocean acidity) due to climate change on reproduction, growth and development of coral trout (Plectropomus leopardis).Ultimately, this research will fill key knowledge gaps about climate change impacts on larger fishes, which are fundamental to optimizing resilience-based management, and in turn improve the adaptive capacity of industries and communities along the Great Barrier Reef.

Management implications of climate change impacts of fisheries resources

This application was developed in response to the widely recognised concern that climate change will result in changes to marine life and ecosystems, and hence fisheries, throughout Australia with tropical marine ecosystems in northern Australia identified as being particularly vulnerable. These changes are predicted to vary spatially depending on local climate and biophysical processes. Northern Australia is one of three major Australian regions predicted to be impacted. The project addresses the important FRDC strategic challenge of improving the management of aquatic natural resources to ensure their sustainability through research and management that accounts for the effects that climate change may have on the resources.

Quantifying the effects of climate change and water abstraction on a population of barramundi (Lates calcarifer), a diadromous estuarine finfish

Many aquatic species are linked to environmental drivers such as temperature and salinity through processes such as spawning, recruitment and growth. Information is needed on how fished species may respond to altered environmental drivers under climate change so that adaptive management strategies can be developed. Barramundi (Lates calcarifer) is a highly prized species of the Indo-West Pacific, whose recruitment and growth is driven by river discharge. We developed a monthly age- and length-structured population model for barramundi. Monte Carlo Markov Chain simulations were used to explore the population's response to altered river discharges under modelled total licenced water abstraction and projected climate change, derived and downscaled from Global Climate Model A1FI. Mean values of exploitable biomass, annual catch, maximum sustainable yield and spawning stock size were significantly reduced under scenarios where river discharge was reduced; despite including uncertainty. These results suggest that the upstream use of water resources and climate change have potential to significantly reduce downstream barramundi stock sizes and harvests and may undermine the inherent resilience of estuarine-dependent fisheries. © 2012 CSIRO.

Major Cellular and Physiological Impacts of Ocean Acidification on a Reef Building Coral

As atmospheric levels of CO2 increase, reef-building corals are under greater stress from both increased sea surface temperatures and declining sea water pH. To date, most studies have focused on either coral bleaching due to warming oceans or declining calcification due to decreasing oceanic carbonate ion concentrations. Here, through the use of physiology measurements and cDNA microarrays, we show that changes in pH and ocean chemistry consistent with two scenarios put forward by the Intergovernmental Panel on Climate Change (IPCC) drive major changes in gene expression, respiration, photosynthesis and symbiosis of the coral, Acropora millepora, before affects on biomineralisation are apparent at the phenotype level. Under high CO2 conditions corals at the phenotype level lost over half their Symbiodinium populations, and had a decrease in both photosynthesis and respiration. Changes in gene expression were consistent with metabolic suppression, an increase in oxidative stress, apoptosis and symbiont loss. Other expression patterns demonstrate upregulation of membrane transporters, as well as the regulation of genes involved in membrane cytoskeletal interactions and cytoskeletal remodeling. These widespread changes in gene expression emphasize the need to expand future studies of ocean acidification to include a wider spectrum of cellular processes, many of which may occur before impacts on calcification.

Biogeographic analysis of the Tortugas Ecological Reserve: Examining the refuge effect following reserve establishment

Almost 120 days at sea aboard three NOAA research vessels and one fishing vessel over the past three years have supported biogeographic characterization of Tortugas Ecological Reserve (TER). This work initiated measurement of post-implementation effects of TER as a refuge for exploited species. In Tortugas South, seafloor transect surveys were conducted using divers, towed operated vehicles (TOV), remotely operated vehicles (ROV), various sonar platforms, and the Deepworker manned submersible. ARGOS drifter releases, satellite imagery, ichthyoplankton surveys, sea surface temperature, and diver census were combined to elucidate potential dispersal of fish spawning in this environment. Surveys are being compiled into a GIS to allow resource managers to gauge benthic resource status and distribution. Drifter studies have determined that within the ~ 30 days of larval life stage for fishes spawning at Tortugas South, larvae could reach as far downstream as Tampa Bay on the west Florida coast and Cape Canaveral on the east coast. Together with actual fish surveys and water mass delineation, this work demonstrates that the refuge status of this area endows it with tremendous downstream spillover and larval export potential for Florida reef habitats and promotes the maintenance of their fish communities. In Tortugas North, 30 randomly selected, permanent stations were established. Five stations were assigned to each of the following six areas: within Dry Tortugas National Park, falling north of the prevailing currents (Park North); within Dry Tortugas National Park, falling south of the prevailing currents (Park South); within the Ecological Reserve falling north of the prevailing currents (Reserve North); within the Ecological Reserve falling south of the prevailing currents (Reserve South); within areas immediately adjacent to these two strata, falling north of the prevailing currents (Out North); and within areas immediately adjacent to these two strata, falling south of the prevailing currents (Out South). Intensive characterization of these sites was conducted using multiple sonar techniques, TOV, ROV, diver-based digital video collection, diver-based fish census, towed fish capture, sediment particle-size, benthic chlorophyll analyses, and stable isotope analyses of primary producers, fish, and, shellfish. In order to complement and extend information from studies focused on the coral reef, we have targeted the ecotone between the reef and adjacent, non-reef habitats as these areas are well-known in ecology for indicating changes in trophic relationships at the ecosystem scale. Such trophic changes are hypothesized to occur as top-down control of the system grows with protection of piscivorous fishes. Preliminary isotope data, in conjunction with our prior results from the west Florida shelf, suggest that the shallow water benthic habitats surrounding the coral reefs of TER will prove to be the source of a significant amount of the primary production ultimately fueling fish production throughout TER and downstream throughout the range of larval fish dispersal. Therefore, the status and influence of the previously neglected, non-reef habitat within the refuge (comprising ~70% of TER) appears to be intimately tied to the health of the coral reef community proper. These data, collected in a biogeographic context, employing an integrated Before-After Control Impact design at multiple spatial scales, leave us poised to document and quantify the postimplementation effects of TER. Combined with the work at Tortugas South, this project represents a multi-disciplinary effort of sometimes disparate disciplines (fishery oceanography, benthic ecology, food web analysis, remote sensing/geography/landscape ecology, and resource management) and approaches (physical, biological, ecological). We expect the continuation of this effort to yield critical information for the management of TER and the evaluation of protected areas as a refuge for exploited species. (PDF contains 32 pages.)

Variação espaço-temporal do microfitoplâncton na região da foz do rio Guamá (estuário amazônico), Belém, PA

O sistema hidrográfico de Belém é constituído por dois grandes corpos hídricos: a baía do Guajará e o rio Guamá, cujo divisor de águas é quase imperceptível. A importância do rio Guamá para a cidade de Belém deve-se ao fato de que esse juntamente com os lagos Água Preta e Bolonha, faz parte do Complexo Hídrico do Utinga, manancial que abastece a cidade. O estudo visou caracterizar a variação espaço-temporal da comunidade microfitoplanctônica nessa região, durante um ciclo anual, em período de maior e menor precipitação pluviométrica, em cinco estações de coleta. As amostras qualitativas foram coletadas com rede de plâncton de 20 μm. Para o estudo quantitativo, foram coletadas diretamente na sub-superfície da água com frascos de polietileno de 250 ml. O material biológico foi fixado com solução Transeau. Simultaneamente, foram registrados os parâmetros abióticos na superfície da água. Os fatores hidrológicos não apresentaram variações relevantes entre as estações e os períodos sazonais. Foram identificadas 173 espécies, destacando-se as diatomáceas como grupo de maior densidade e que caracteriza o ambiente. Não foram observadas espécies dominantes durante o período estudado. Através da abundância relativa, constatou-se que a maioria dos organismos foi considerada rara. A diversidade específica variou de muito baixa a alta, sendo observados baixos índices de diversidade no período menos chuvoso, destacando-se a ocorrência das espécies Aulacoseira granulata (Ehrenb.) Ralfs, Actinoptychus sp. e Cyclotella sp. Já a densidade fitoplanctônica apresentou variação temporal definida, sendo registrados os maiores florescimentos durante o período mais chuvoso. Quanto à variação espacial, não houve um padrão em relação aos períodos sazonais. As euglenofíceas foram pouco freqüentes ou esporádicas e se restringiram ao período menos chuvoso, já os dinoflagelados estiveram presentes nos dois períodos, embora considerados organismos marinhos, foram registradas duas espécies do gênero Peridinium. A comunidade fitoplanctônica não apresentou diferenças significativas entre as estações de coleta, provavelmente devido à hidrodinâmica e à forte drenagem fluvial do rio Guamá.

Paleolimnologically inferred eutrophication of a shallow, tropical, urban reservoir in southeast Brazil

We studied the eutrophication history of a tropical shallow reservoir in the So Paulo metropolitan region, southeast Brazil. We analyzed grain size, geochemistry, diatom assemblages, and land-use records in a sediment core from the reservoir to infer its trophic state history during the last similar to 110 years (1894-2005). Eighty diatom species were observed in the core and shifts in the relative abundances of planktonic and benthic taxa indicate major limnological changes associated with complex interactions between hydrologic factors and eutrophication. Discostella stelligera was associated with deforestation and water physical changes whereas Aulacoseira granulata, a species abundant throughout the core, was mostly associated with high flux conditions and erosion events, regardless of trophic state. Eutrophication was triggered by construction of the city zoo (1958) and installation of the So Paulo State Department of Agriculture (1975) within the Gar double dagger as watershed, and increasing loads of untreated sewage from these institutions. The data suggest that deterioration in water quality began after similar to 1975 and markedly accelerated after similar to 1990. The reservoir has been hypereutrophic since 1999. Steady increases in geochemical proxies for trophic state, along with a decrease in C/N ratios, indicated higher nutrient concentrations and the prevalence of autochthonous production towards the core top. Appearance of Achnanthidium catenatum similar to 1993 highlighted the onset of a marked eutrophication phase. The subsequent dominance of Planothidium rostratum and Cyclotella meneghiniana suggested a sharp shift to a hypereutrophic state since 1999. Land-use history proved valuable for validating the chronology and interpreting anthropogenic impacts. Multi-proxy analysis of the sediment record provided an effective tool for tracking ecological shifts in the reservoir ecosystem. This study provides the first reconstruction of lake eutrophication history in Brazil and highlights the importance of hydrological/physical changes as drivers of diatom assemblage shifts in reservoirs, which may confound trophic state inferences based on shifts in the planktonic/benthic diatom ratio.